CVE-2026-31969 (GCVE-0-2026-31969)
Vulnerability from cvelistv5
Published
2026-03-18 19:47
Modified
2026-03-18 20:12
Severity ?
VLAI Severity ?
EPSS score ?
Summary
HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.
References
| URL | Tags | |
|---|---|---|
Impacted products
{
"containers": {
"adp": [
{
"metrics": [
{
"other": {
"content": {
"id": "CVE-2026-31969",
"options": [
{
"Exploitation": "none"
},
{
"Automatable": "no"
},
{
"Technical Impact": "partial"
}
],
"role": "CISA Coordinator",
"timestamp": "2026-03-18T20:12:27.506059Z",
"version": "2.0.3"
},
"type": "ssvc"
}
}
],
"providerMetadata": {
"dateUpdated": "2026-03-18T20:12:53.495Z",
"orgId": "134c704f-9b21-4f2e-91b3-4a467353bcc0",
"shortName": "CISA-ADP"
},
"title": "CISA ADP Vulnrichment"
}
],
"cna": {
"affected": [
{
"product": "htslib",
"vendor": "samtools",
"versions": [
{
"status": "affected",
"version": "\u003c 1.21.1"
},
{
"status": "affected",
"version": "\u003e= 1.22, \u003c 1.22.2"
},
{
"status": "affected",
"version": "= 1.23"
}
]
}
],
"descriptions": [
{
"lang": "en",
"value": "HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue."
}
],
"metrics": [
{
"cvssV4_0": {
"attackComplexity": "LOW",
"attackRequirements": "NONE",
"attackVector": "NETWORK",
"baseScore": 7.1,
"baseSeverity": "HIGH",
"privilegesRequired": "NONE",
"subAvailabilityImpact": "NONE",
"subConfidentialityImpact": "NONE",
"subIntegrityImpact": "NONE",
"userInteraction": "PASSIVE",
"vectorString": "CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:P/VC:N/VI:H/VA:L/SC:N/SI:N/SA:N",
"version": "4.0",
"vulnAvailabilityImpact": "LOW",
"vulnConfidentialityImpact": "NONE",
"vulnIntegrityImpact": "HIGH"
}
}
],
"problemTypes": [
{
"descriptions": [
{
"cweId": "CWE-122",
"description": "CWE-122: Heap-based Buffer Overflow",
"lang": "en",
"type": "CWE"
}
]
},
{
"descriptions": [
{
"cweId": "CWE-787",
"description": "CWE-787: Out-of-bounds Write",
"lang": "en",
"type": "CWE"
}
]
}
],
"providerMetadata": {
"dateUpdated": "2026-03-18T19:47:44.893Z",
"orgId": "a0819718-46f1-4df5-94e2-005712e83aaa",
"shortName": "GitHub_M"
},
"references": [
{
"name": "https://github.com/samtools/htslib/security/advisories/GHSA-q4cj-f4h5-fqgc",
"tags": [
"x_refsource_CONFIRM"
],
"url": "https://github.com/samtools/htslib/security/advisories/GHSA-q4cj-f4h5-fqgc"
},
{
"name": "https://github.com/samtools/htslib/commit/88cdf69e4b83bb550ab4f6f7134892c2ad1978f4",
"tags": [
"x_refsource_MISC"
],
"url": "https://github.com/samtools/htslib/commit/88cdf69e4b83bb550ab4f6f7134892c2ad1978f4"
}
],
"source": {
"advisory": "GHSA-q4cj-f4h5-fqgc",
"discovery": "UNKNOWN"
},
"title": "HTSlib CRAM decoder has a heap buffer overflow"
}
},
"cveMetadata": {
"assignerOrgId": "a0819718-46f1-4df5-94e2-005712e83aaa",
"assignerShortName": "GitHub_M",
"cveId": "CVE-2026-31969",
"datePublished": "2026-03-18T19:47:44.893Z",
"dateReserved": "2026-03-10T15:40:10.485Z",
"dateUpdated": "2026-03-18T20:12:53.495Z",
"state": "PUBLISHED"
},
"dataType": "CVE_RECORD",
"dataVersion": "5.2",
"vulnerability-lookup:meta": {
"vulnrichment": {
"containers": "{\"adp\": [{\"title\": \"CISA ADP Vulnrichment\", \"metrics\": [{\"other\": {\"type\": \"ssvc\", \"content\": {\"id\": \"CVE-2026-31969\", \"role\": \"CISA Coordinator\", \"options\": [{\"Exploitation\": \"none\"}, {\"Automatable\": \"no\"}, {\"Technical Impact\": \"partial\"}], \"version\": \"2.0.3\", \"timestamp\": \"2026-03-18T20:12:27.506059Z\"}}}], \"providerMetadata\": {\"orgId\": \"134c704f-9b21-4f2e-91b3-4a467353bcc0\", \"shortName\": \"CISA-ADP\", \"dateUpdated\": \"2026-03-18T20:12:46.162Z\"}}], \"cna\": {\"title\": \"HTSlib CRAM decoder has a heap buffer overflow\", \"source\": {\"advisory\": \"GHSA-q4cj-f4h5-fqgc\", \"discovery\": \"UNKNOWN\"}, \"metrics\": [{\"cvssV4_0\": {\"version\": \"4.0\", \"baseScore\": 7.1, \"attackVector\": \"NETWORK\", \"baseSeverity\": \"HIGH\", \"vectorString\": \"CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:P/VC:N/VI:H/VA:L/SC:N/SI:N/SA:N\", \"userInteraction\": \"PASSIVE\", \"attackComplexity\": \"LOW\", \"attackRequirements\": \"NONE\", \"privilegesRequired\": \"NONE\", \"subIntegrityImpact\": \"NONE\", \"vulnIntegrityImpact\": \"HIGH\", \"subAvailabilityImpact\": \"NONE\", \"vulnAvailabilityImpact\": \"LOW\", \"subConfidentialityImpact\": \"NONE\", \"vulnConfidentialityImpact\": \"NONE\"}}], \"affected\": [{\"vendor\": \"samtools\", \"product\": \"htslib\", \"versions\": [{\"status\": \"affected\", \"version\": \"\u003c 1.21.1\"}, {\"status\": \"affected\", \"version\": \"\u003e= 1.22, \u003c 1.22.2\"}, {\"status\": \"affected\", \"version\": \"= 1.23\"}]}], \"references\": [{\"url\": \"https://github.com/samtools/htslib/security/advisories/GHSA-q4cj-f4h5-fqgc\", \"name\": \"https://github.com/samtools/htslib/security/advisories/GHSA-q4cj-f4h5-fqgc\", \"tags\": [\"x_refsource_CONFIRM\"]}, {\"url\": \"https://github.com/samtools/htslib/commit/88cdf69e4b83bb550ab4f6f7134892c2ad1978f4\", \"name\": \"https://github.com/samtools/htslib/commit/88cdf69e4b83bb550ab4f6f7134892c2ad1978f4\", \"tags\": [\"x_refsource_MISC\"]}], \"descriptions\": [{\"lang\": \"en\", \"value\": \"HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.\"}], \"problemTypes\": [{\"descriptions\": [{\"lang\": \"en\", \"type\": \"CWE\", \"cweId\": \"CWE-122\", \"description\": \"CWE-122: Heap-based Buffer Overflow\"}]}, {\"descriptions\": [{\"lang\": \"en\", \"type\": \"CWE\", \"cweId\": \"CWE-787\", \"description\": \"CWE-787: Out-of-bounds Write\"}]}], \"providerMetadata\": {\"orgId\": \"a0819718-46f1-4df5-94e2-005712e83aaa\", \"shortName\": \"GitHub_M\", \"dateUpdated\": \"2026-03-18T19:47:44.893Z\"}}}",
"cveMetadata": "{\"cveId\": \"CVE-2026-31969\", \"state\": \"PUBLISHED\", \"dateUpdated\": \"2026-03-18T20:12:53.495Z\", \"dateReserved\": \"2026-03-10T15:40:10.485Z\", \"assignerOrgId\": \"a0819718-46f1-4df5-94e2-005712e83aaa\", \"datePublished\": \"2026-03-18T19:47:44.893Z\", \"assignerShortName\": \"GitHub_M\"}",
"dataType": "CVE_RECORD",
"dataVersion": "5.2"
}
}
}
Loading…
Loading…
Sightings
| Author | Source | Type | Date |
|---|
Nomenclature
- Seen: The vulnerability was mentioned, discussed, or seen somewhere by the user.
- Confirmed: The vulnerability is confirmed from an analyst perspective.
- Published Proof of Concept: A public proof of concept is available for this vulnerability.
- Exploited: This vulnerability was exploited and seen by the user reporting the sighting.
- Patched: This vulnerability was successfully patched by the user reporting the sighting.
- Not exploited: This vulnerability was not exploited or seen by the user reporting the sighting.
- Not confirmed: The user expresses doubt about the veracity of the vulnerability.
- Not patched: This vulnerability was not successfully patched by the user reporting the sighting.
Loading…
Loading…